Tutorials¶
Quick Start¶
Get up and running with minimal setup. Learn how to install dependencies, prepare your data, and run your first example in just a few commands.
Common Use Cases¶
Train a Pertubation Model¶
Step through the process of training a model to predict cellular responses to genetic or chemical perturbations using your own single-cell datasets.
Use custom models¶
Integrate external machine learning models into the workflow. Learn how to plug in your own architectures or pretrained models for flexible experimentation.
Create a submission to the Virtual Cell Challenge¶
Learn how to package your trained model and datasets into the required format for the Virtual Cell Challenge. This section walks you through preparing submission files, validating them locally, and uploading your entry for official evaluation.
More Tutorials¶
Please visit protoplast-ml-example to get the latest examples of PROTOplast.